MD DaVis

MD DaVis is a tool and Python 3 package to easily create helpful interactive visualizations to analyze and compare multiple molecular dynamics simulations of proteins.

Documentation

• Introduction
  • Features of MD DaVis
  • Molecular Dynamics Analysis Tools
• User Guide
  • Quickstart
  • Install
  • Uninstall
  • Free Energy Landscapes
  • Surface Electrostatic Potential Per Residue
  • Electric Field Dynamics
  • Residue Property Plot
  • Contact/H-bond matrix
  • Contributing
  • History
• Tutorials
  • Acylphosphatase Homologs
  • Sickle and Normal Oxyhemoglobin
• Commands
  • md_davis collate
  • md_davis electrodynamics
  • md_davis electrostatics
  • md_davis hbond
  • md_davis landscape_animate
  • md_davis landscape_xvg
  • md_davis plot_hbond
  • md_davis plot_residue
  • md_davis residue
  • md_davis sequence
  • md_davis xvg

Indices and tables

• Index

• Module Index

• Search Page

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Introduction