User Guide# Quickstart Step 1: Calculate the required quantities Step 2: Collate the data into an HDF file Step 3: Plot the free energy landscape Step 4: Plot the residue property plot Plotting Xmgrace (.xvg) Files md-davis xvg Sequence Collate Analysis Data HDF Files Free Energy Landscapes Free Energy Landscapes from xvg files Plot Free Energy Landscapes from HDF Files Plot Free Energy Landscapes Overlaid with Trajectory Points Surface Electrostatic Potential Per Residue Electric Field Dynamics Residue Property Plot Secondary Structure How to interact with the plot Contact/H-bond matrix Motivation Steps Bonus Tip Contributing Types of Contributions Development History 0.1.0 (2019-09-06) 0.2.0 (2020-04-10) 0.3.0 (2021-10-01) 0.4.0 (2022-02-23) 0.4.1 (2022-03-02)